Detailed information of SNP:
|
SNP ID:
sf0123461160(Gbrowse)
Chromosome: chr01 Position: 23461160 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 52.67% | 47.33% |
| All Indica | 787 | 90.09% | 9.91% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 373 | 92.23% | 7.77% |
| Indica II | 209 | 89.95% | 10.05% |
| Indica Intermediate | 205 | 86.34% | 13.66% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 32.50% | 67.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123461160 | G->A | LOC_Os01g41440(LOC_Os01g41440.1) | INTRON |