Detailed information of SNP:
|
SNP ID:
sf0123495347(Gbrowse)
Chromosome: chr01 Position: 23495347 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 52.59% | 47.41% |
| All Indica | 790 | 30.89% | 69.11% |
| All Japonica | 479 | 81.84% | 18.16% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 369 | 13.82% | 86.18% |
| Indica II | 210 | 40.95% | 59.05% |
| Indica Intermediate | 211 | 50.71% | 49.29% |
| Temperate Japonica | 323 | 88.54% | 11.46% |
| Tropical Japonica | 90 | 55.56% | 44.44% |
| Japonica Intermediate | 66 | 84.85% | 15.15% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123495347 | C->T | INTERGENIC | None |