Detailed information of SNP:
|
SNP ID:
sf0123495821(Gbrowse)
Chromosome: chr01 Position: 23495821 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 78.31% | 21.69% |
| All Indica | 799 | 95.49% | 4.51% |
| All Japonica | 477 | 45.70% | 54.30% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 319 | 37.93% | 62.07% |
| Tropical Japonica | 91 | 81.32% | 18.68% |
| Japonica Intermediate | 67 | 34.33% | 65.67% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123495821 | T->C | INTERGENIC | None |