Detailed information of SNP:
|
SNP ID:
sf0123524586(Gbrowse)
Chromosome: chr01 Position: 23524586 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 61.14% | 38.86% |
| All Indica | 789 | 33.97% | 66.03% |
| All Japonica | 466 | 99.14% | 0.86% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 13.48% | 86.52% |
| Indica II | 210 | 46.19% | 53.81% |
| Indica Intermediate | 208 | 58.17% | 41.83% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 70 | 97.14% | 2.86% |
| Japonica Intermediate | 61 | 98.36% | 1.64% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123524586 | C->T | INTERGENIC | None |