Detailed information of SNP:
|
SNP ID:
sf0123528694(Gbrowse)
Chromosome: chr01 Position: 23528694 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 75.54% | 24.46% |
| All Indica | 781 | 95.01% | 4.99% |
| All Japonica | 489 | 41.10% | 58.90% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 366 | 95.90% | 4.10% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 205 | 95.61% | 4.39% |
| Temperate Japonica | 335 | 39.40% | 60.60% |
| Tropical Japonica | 90 | 33.33% | 66.67% |
| Japonica Intermediate | 64 | 60.94% | 39.06% |
| Group VI/Aromatic | 5 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123528694 | C->T | INTERGENIC | None |