Detailed information of SNP:



SNP ID: sf0123533081(Gbrowse)

Chromosome: chr01

Position: 23533081
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1377 93.32% 6.68%
All Indica758 87.99% 12.01%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I374 98.66% 1.34%
Indica II194 84.54% 15.46%
Indica Intermediate190 70.53% 29.47%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 97.56% 2.44%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0123533081 G->A INTERGENIC None