Detailed information of SNP:
|
SNP ID:
sf0123533619(Gbrowse)
Chromosome: chr01 Position: 23533619 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 83.66% | 16.34% |
| All Indica | 797 | 79.92% | 20.08% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 64 | 10.94% | 89.06% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 211 | 72.99% | 27.01% |
| Indica Intermediate | 211 | 57.35% | 42.65% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123533619 | C->T | INTERGENIC | None |