Detailed information of SNP:
|
SNP ID:
sf0123547301(Gbrowse)
Chromosome: chr01 Position: 23547301 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 59.77% | 40.23% |
| All Indica | 789 | 80.61% | 19.39% |
| All Japonica | 496 | 28.43% | 71.57% |
| Aus | 61 | 44.26% | 55.74% |
| Indica I | 371 | 97.57% | 2.43% |
| Indica II | 211 | 69.67% | 30.33% |
| Indica Intermediate | 207 | 61.35% | 38.65% |
| Temperate Japonica | 335 | 20.90% | 79.10% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123547301 | A->G | LOC_Os01g41590(LOC_Os01g41590.1) | Synonymous |