Detailed information of SNP:
|
SNP ID:
sf0123549901(Gbrowse)
Chromosome: chr01 Position: 23549901 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 90.28% | 9.72% |
| All Indica | 789 | 83.27% | 16.73% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 209 | 73.68% | 26.32% |
| Indica Intermediate | 206 | 65.05% | 34.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123549901 | C->T | INTERGENIC | None |