Detailed information of SNP:
|
SNP ID:
sf0123558063(Gbrowse)
Chromosome: chr01 Position: 23558063 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1195 | 78.49% | 21.51% |
| All Indica | 743 | 86.94% | 13.06% |
| All Japonica | 334 | 55.09% | 44.91% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 370 | 99.19% | 0.81% |
| Indica II | 196 | 73.98% | 26.02% |
| Indica Intermediate | 177 | 75.71% | 24.29% |
| Temperate Japonica | 227 | 45.37% | 54.63% |
| Tropical Japonica | 46 | 93.48% | 6.52% |
| Japonica Intermediate | 61 | 62.30% | 37.70% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 81.08% | 18.92% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123558063 | A->G | INTERGENIC | None |