Detailed information of SNP:
|
SNP ID:
sf0123558480(Gbrowse)
Chromosome: chr01 Position: 23558480 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 70.97% | 29.03% |
| All Indica | 797 | 76.41% | 23.59% |
| All Japonica | 497 | 57.75% | 42.25% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 212 | 64.15% | 35.85% |
| Indica Intermediate | 210 | 52.38% | 47.62% |
| Temperate Japonica | 335 | 56.72% | 43.28% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123558480 | A->G | INTERGENIC | None |