Detailed information of SNP:
|
SNP ID:
sf0123559869(Gbrowse)
Chromosome: chr01 Position: 23559869 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1206 | 78.69% | 21.31% |
| All Indica | 792 | 78.03% | 21.97% |
| All Japonica | 298 | 73.83% | 26.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 208 | 66.35% | 33.65% |
| Indica Intermediate | 209 | 54.55% | 45.45% |
| Temperate Japonica | 197 | 68.02% | 31.98% |
| Tropical Japonica | 42 | 97.62% | 2.38% |
| Japonica Intermediate | 59 | 76.27% | 23.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123559869 | C->T | INTERGENIC | None |