Detailed information of SNP:



SNP ID: sf0123569408(Gbrowse)

Chromosome: chr01

Position: 23569408
Major allele: G

Minor allele: T

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1407 99.43% 0.57%
All Indica798 99.75% 0.25%
All Japonica488 98.77% 1.23%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II212 99.53% 0.47%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica86 93.02% 6.98%
Japonica Intermediate67 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0123569408 G->T LOC_Os01g41630(LOC_Os01g41630.1) INTRON