Detailed information of SNP:
|
SNP ID:
sf0123621293(Gbrowse)
Chromosome: chr01 Position: 23621293 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 54.17% | 45.83% |
| All Indica | 798 | 76.07% | 23.93% |
| All Japonica | 497 | 12.27% | 87.73% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 210 | 52.38% | 47.62% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123621293 | G->A | INTERGENIC | None |