Detailed information of SNP:
|
SNP ID:
sf0123627746(Gbrowse)
Chromosome: chr01 Position: 23627746 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 81.93% | 18.07% |
| All Indica | 798 | 72.56% | 27.44% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 212 | 59.91% | 40.09% |
| Indica Intermediate | 211 | 49.76% | 50.24% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123627746 | T->C | INTERGENIC | None |