Detailed information of SNP:
|
SNP ID:
sf0123631967(Gbrowse)
Chromosome: chr01 Position: 23631967 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 63.66% | 36.34% |
| All Indica | 798 | 72.06% | 27.94% |
| All Japonica | 497 | 47.28% | 52.72% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 212 | 59.91% | 40.09% |
| Indica Intermediate | 211 | 49.29% | 50.71% |
| Temperate Japonica | 335 | 42.39% | 57.61% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123631967 | T->G | LOC_Os01g41750(LOC_Os01g41750.1) | Non-Synonymous SNP |