Detailed information of SNP:
|
SNP ID:
sf0123632479(Gbrowse)
Chromosome: chr01 Position: 23632479 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 82.09% | 17.91% |
| All Indica | 798 | 72.93% | 27.07% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 212 | 60.38% | 39.62% |
| Indica Intermediate | 211 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123632479 | G->A | LOC_Os01g41750(LOC_Os01g41750.1) | Non-Synonymous SNP |