Detailed information of SNP:
|
SNP ID:
sf0123657340(Gbrowse)
Chromosome: chr01 Position: 23657340 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1353 | 62.08% | 37.92% |
| All Indica | 792 | 92.55% | 7.45% |
| All Japonica | 480 | 9.38% | 90.62% |
| Aus | 44 | 93.18% | 6.82% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 208 | 92.79% | 7.21% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 80 | 41.25% | 58.75% |
| Japonica Intermediate | 66 | 16.67% | 83.33% |
| Group VI/Aromatic | 4 | 50.00% | 50.00% |
| Intermediate | 33 | 57.58% | 42.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123657340 | G->A | INTERGENIC | None |