Detailed information of SNP:
|
SNP ID:
sf0123657636(Gbrowse)
Chromosome: chr01 Position: 23657636 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 64.71% | 35.29% |
| All Indica | 795 | 96.98% | 3.02% |
| All Japonica | 496 | 13.71% | 86.29% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123657636 | T->C | INTERGENIC | None |