Detailed information of SNP:



SNP ID: sf0123664548(Gbrowse)

Chromosome: chr01

Position: 23664548
Major allele: C

Minor allele: G

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of G(minor allele)
All1404 54.91% 45.09%
All Indica784 29.59% 70.41%
All Japonica497 99.20% 0.80%
Aus67 13.43% 86.57%
Indica I371 12.13% 87.87%
Indica II210 40.48% 59.52%
Indica Intermediate203 50.25% 49.75%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 57.14% 42.86%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0123664548 C->G INTERGENIC None