Detailed information of SNP:
|
SNP ID:
sf0123664548(Gbrowse)
Chromosome: chr01 Position: 23664548 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 54.91% | 45.09% |
| All Indica | 784 | 29.59% | 70.41% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 371 | 12.13% | 87.87% |
| Indica II | 210 | 40.48% | 59.52% |
| Indica Intermediate | 203 | 50.25% | 49.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123664548 | C->G | INTERGENIC | None |