Detailed information of SNP:
|
SNP ID:
sf0123672539(Gbrowse)
Chromosome: chr01 Position: 23672539 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 52.85% | 47.15% |
| All Indica | 799 | 30.29% | 69.71% |
| All Japonica | 497 | 93.36% | 6.64% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 12.53% | 87.47% |
| Indica II | 213 | 40.38% | 59.62% |
| Indica Intermediate | 211 | 51.66% | 48.34% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123672539 | G->A | LOC_Os01g41810(LOC_Os01g41810.1) | Synonymous |