Detailed information of SNP:
|
SNP ID:
sf0123673584(Gbrowse)
Chromosome: chr01 Position: 23673584 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 89.97% | 10.03% |
| All Indica | 798 | 88.97% | 11.03% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123673584 | C->A | LOC_Os01g41810(LOC_Os01g41810.1) | INTRON |