Detailed information of SNP:
|
SNP ID:
sf0123675144(Gbrowse)
Chromosome: chr01 Position: 23675144 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 56.64% | 43.36% |
| All Indica | 797 | 29.86% | 70.14% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 11.73% | 88.27% |
| Indica II | 213 | 40.38% | 59.62% |
| Indica Intermediate | 209 | 51.67% | 48.33% |
| Temperate Japonica | 335 | 91.64% | 8.36% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123675144 | T->C | INTERGENIC | None |