Detailed information of SNP:
|
SNP ID:
sf0123675209(Gbrowse)
Chromosome: chr01 Position: 23675209 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 81.93% | 18.07% |
| All Indica | 792 | 75.88% | 24.12% |
| All Japonica | 496 | 93.55% | 6.45% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 208 | 65.38% | 34.62% |
| Indica Intermediate | 209 | 61.72% | 38.28% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123675209 | T->C | INTERGENIC | None |