Detailed information of SNP:
|
SNP ID:
sf0123678703(Gbrowse)
Chromosome: chr01 Position: 23678703 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 87.99% | 12.01% |
| All Indica | 796 | 86.31% | 13.69% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 211 | 70.62% | 29.38% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123678703 | A->T | INTERGENIC | None |