Detailed information of SNP:
|
SNP ID:
sf0123680937(Gbrowse)
Chromosome: chr01 Position: 23680937 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 71.76% | 28.24% |
| All Indica | 798 | 54.51% | 45.49% |
| All Japonica | 495 | 96.16% | 3.84% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 374 | 70.86% | 29.14% |
| Indica II | 213 | 18.31% | 81.69% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123680937 | A->G | INTERGENIC | None |