Detailed information of SNP:
|
SNP ID:
sf0123682576(Gbrowse)
Chromosome: chr01 Position: 23682576 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 72.41% | 27.59% |
| All Indica | 799 | 55.07% | 44.93% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 71.73% | 28.27% |
| Indica II | 213 | 18.78% | 81.22% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123682576 | C->T | LOC_Os01g41820(LOC_Os01g41820.1) | INTRON |