Detailed information of SNP:
|
SNP ID:
sf0123682584(Gbrowse)
Chromosome: chr01 Position: 23682584 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 71.77% | 28.23% |
| All Indica | 792 | 53.79% | 46.21% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 71.12% | 28.88% |
| Indica II | 211 | 16.59% | 83.41% |
| Indica Intermediate | 207 | 60.39% | 39.61% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123682584 | G->A | LOC_Os01g41820(LOC_Os01g41820.1) | INTRON |