Detailed information of SNP:
|
SNP ID:
sf0123682629(Gbrowse)
Chromosome: chr01 Position: 23682629 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 72.68% | 27.32% |
| All Indica | 794 | 55.54% | 44.46% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 372 | 72.85% | 27.15% |
| Indica II | 212 | 18.40% | 81.60% |
| Indica Intermediate | 210 | 62.38% | 37.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123682629 | G->A | LOC_Os01g41820(LOC_Os01g41820.1) | INTRON |