Detailed information of SNP:
|
SNP ID:
sf0123683653(Gbrowse)
Chromosome: chr01 Position: 23683653 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 67.30% | 32.70% |
| All Indica | 796 | 51.51% | 48.49% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 30.48% | 69.52% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 209 | 51.20% | 48.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123683653 | C->T | LOC_Os01g41820(LOC_Os01g41820.1) | INTRON |