Detailed information of SNP:
|
SNP ID:
sf0123683658(Gbrowse)
Chromosome: chr01 Position: 23683658 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 64.83% | 35.17% |
| All Indica | 796 | 47.24% | 52.76% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 25.94% | 74.06% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 209 | 45.45% | 54.55% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123683658 | T->C | LOC_Os01g41820(LOC_Os01g41820.1) | INTRON |