Detailed information of SNP:
|
SNP ID:
sf0123683732(Gbrowse)
Chromosome: chr01 Position: 23683732 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 73.23% | 26.77% |
| All Indica | 796 | 56.53% | 43.47% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 75.20% | 24.80% |
| Indica II | 212 | 17.92% | 82.08% |
| Indica Intermediate | 209 | 62.20% | 37.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123683732 | C->T | LOC_Os01g41820(LOC_Os01g41820.1) | INTRON |