Detailed information of SNP:
|
SNP ID:
sf0123684438(Gbrowse)
Chromosome: chr01 Position: 23684438 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 69.47% | 30.53% |
| All Indica | 795 | 53.71% | 46.29% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 71.12% | 28.88% |
| Indica II | 213 | 15.96% | 84.04% |
| Indica Intermediate | 208 | 61.06% | 38.94% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123684438 | A->G | INTERGENIC | None |