Detailed information of SNP:
|
SNP ID:
sf0123685462(Gbrowse)
Chromosome: chr01 Position: 23685462 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 71.84% | 28.16% |
| All Indica | 792 | 57.45% | 42.55% |
| All Japonica | 495 | 90.51% | 9.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 75.00% | 25.00% |
| Indica II | 212 | 21.70% | 78.30% |
| Indica Intermediate | 208 | 62.50% | 37.50% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123685462 | G->A | INTERGENIC | None |