Detailed information of SNP:
|
SNP ID:
sf0123686420(Gbrowse)
Chromosome: chr01 Position: 23686420 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1353 | 81.82% | 18.18% |
| All Indica | 740 | 68.38% | 31.62% |
| All Japonica | 492 | 98.37% | 1.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 350 | 82.00% | 18.00% |
| Indica II | 185 | 41.08% | 58.92% |
| Indica Intermediate | 205 | 69.76% | 30.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 92.13% | 7.87% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123686420 | G->T | INTERGENIC | None |