Detailed information of SNP:
|
SNP ID:
sf0123688572(Gbrowse)
Chromosome: chr01 Position: 23688572 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1178 | 74.53% | 25.47% |
| All Indica | 570 | 73.16% | 26.84% |
| All Japonica | 492 | 88.41% | 11.59% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 318 | 78.93% | 21.07% |
| Indica II | 107 | 39.25% | 60.75% |
| Indica Intermediate | 145 | 85.52% | 14.48% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 51.11% | 48.89% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 35 | 48.57% | 51.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123688572 | T->C | LOC_Os01g41834(LOC_Os01g41834.1) | INTRON |