Detailed information of SNP:
|
SNP ID:
sf0123690845(Gbrowse)
Chromosome: chr01 Position: 23690845 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.91% | 41.09% |
| All Indica | 799 | 86.11% | 13.89% |
| All Japonica | 497 | 13.28% | 86.72% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123690845 | A->T | LOC_Os01g41834(LOC_Os01g41834.1) | Non-Synonymous SNP |