Detailed information of SNP:
|
SNP ID:
sf0123691189(Gbrowse)
Chromosome: chr01 Position: 23691189 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 66.01% | 33.99% |
| All Indica | 796 | 51.88% | 48.12% |
| All Japonica | 497 | 90.54% | 9.46% |
| Aus | 65 | 53.85% | 46.15% |
| Indica I | 373 | 66.49% | 33.51% |
| Indica II | 212 | 19.34% | 80.66% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123691189 | C->T | INTERGENIC | None |