Detailed information of SNP:
|
SNP ID:
sf0123692217(Gbrowse)
Chromosome: chr01 Position: 23692217 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 73.85% | 26.15% |
| All Indica | 795 | 57.11% | 42.89% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 74.87% | 25.13% |
| Indica II | 212 | 21.23% | 78.77% |
| Indica Intermediate | 209 | 61.72% | 38.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123692217 | G->C | INTERGENIC | None |