Detailed information of SNP:
|
SNP ID:
sf0123695021(Gbrowse)
Chromosome: chr01 Position: 23695021 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 72.27% | 27.73% |
| All Indica | 797 | 97.49% | 2.51% |
| All Japonica | 462 | 23.81% | 76.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 307 | 15.64% | 84.36% |
| Tropical Japonica | 90 | 53.33% | 46.67% |
| Japonica Intermediate | 65 | 21.54% | 78.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123695021 | T->C | INTERGENIC | None |