Detailed information of SNP:
|
SNP ID:
sf0123695118(Gbrowse)
Chromosome: chr01 Position: 23695118 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 70.73% | 29.27% |
| All Indica | 798 | 52.76% | 47.24% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 35.29% | 64.71% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 211 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123695118 | C->T | INTERGENIC | None |