Detailed information of SNP:
|
SNP ID:
sf0123701176(Gbrowse)
Chromosome: chr01 Position: 23701176 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1220 | 57.70% | 42.30% |
| All Indica | 631 | 30.11% | 69.89% |
| All Japonica | 470 | 92.77% | 7.23% |
| Aus | 64 | 81.25% | 18.75% |
| Indica I | 289 | 24.91% | 75.09% |
| Indica II | 173 | 19.08% | 80.92% |
| Indica Intermediate | 169 | 50.30% | 49.70% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 74 | 63.51% | 36.49% |
| Japonica Intermediate | 61 | 90.16% | 9.84% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123701176 | T->C | LOC_Os01g41850(LOC_Os01g41850.1) | Non-Synonymous SNP |