Detailed information of SNP:
|
SNP ID:
sf0123702711(Gbrowse)
Chromosome: chr01 Position: 23702711 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 67.87% | 32.13% |
| All Indica | 798 | 51.50% | 48.50% |
| All Japonica | 495 | 93.13% | 6.87% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 66.40% | 33.60% |
| Indica II | 213 | 17.84% | 82.16% |
| Indica Intermediate | 210 | 59.05% | 40.95% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123702711 | G->A | LOC_Os01g41850(LOC_Os01g41850.1) | INTRON |