Detailed information of SNP:
|
SNP ID:
sf0123707035(Gbrowse)
Chromosome: chr01 Position: 23707035 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 76.03% | 23.97% |
| All Indica | 787 | 61.50% | 38.50% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 79.84% | 20.16% |
| Indica II | 211 | 25.12% | 74.88% |
| Indica Intermediate | 209 | 66.03% | 33.97% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123707035 | G->A | INTERGENIC | None |