Detailed information of SNP:
|
SNP ID:
sf0123707126(Gbrowse)
Chromosome: chr01 Position: 23707126 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 73.61% | 26.39% |
| All Indica | 798 | 57.52% | 42.48% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 74.67% | 25.33% |
| Indica II | 212 | 22.17% | 77.83% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123707126 | G->A | INTERGENIC | None |