Detailed information of SNP:
|
SNP ID:
sf0123715148(Gbrowse)
Chromosome: chr01 Position: 23715148 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 81.82% | 18.18% |
| All Indica | 761 | 68.86% | 31.14% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 79.23% | 20.77% |
| Indica II | 190 | 46.84% | 53.16% |
| Indica Intermediate | 205 | 70.73% | 29.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123715148 | C->A | INTERGENIC | None |