Detailed information of SNP:
|
SNP ID:
sf0123719099(Gbrowse)
Chromosome: chr01 Position: 23719099 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 74.73% | 25.27% |
| All Indica | 793 | 57.38% | 42.62% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 75.13% | 24.87% |
| Indica II | 210 | 18.57% | 81.43% |
| Indica Intermediate | 209 | 64.59% | 35.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123719099 | G->A | INTERGENIC | None |