Detailed information of SNP:
|
SNP ID:
sf0123783059(Gbrowse)
Chromosome: chr01 Position: 23783059 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 87.97% | 12.03% |
| All Indica | 793 | 87.64% | 12.36% |
| All Japonica | 492 | 95.93% | 4.07% |
| Aus | 50 | 18.00% | 82.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 207 | 61.35% | 38.65% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 78.65% | 21.35% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123783059 | C->T | LOC_Os01g41950(LOC_Os01g41950.1) | UTR_5_PRIME |