Detailed information of SNP:
|
SNP ID:
sf0123794629(Gbrowse)
Chromosome: chr01 Position: 23794629 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 58.43% | 41.57% |
| All Indica | 786 | 84.10% | 15.90% |
| All Japonica | 497 | 23.94% | 76.06% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 370 | 95.68% | 4.32% |
| Indica II | 205 | 91.22% | 8.78% |
| Indica Intermediate | 211 | 56.87% | 43.13% |
| Temperate Japonica | 335 | 23.88% | 76.12% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123794629 | T->C | LOC_Os01g41960(LOC_Os01g41960.1) | Synonymous |