Detailed information of SNP:
|
SNP ID:
sf0123799619(Gbrowse)
Chromosome: chr01 Position: 23799619 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 69.96% | 30.04% |
| All Indica | 798 | 54.14% | 45.86% |
| All Japonica | 496 | 93.75% | 6.25% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 374 | 25.13% | 74.87% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123799619 | A->G | INTERGENIC | None |